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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th … We revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … Notable Stories …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the …
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one … more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … do—can help researchers develop predictive watershed scale models to manage river ecosystems. One application for the … to study river microbiomes. To understand the microbiology of watershed systems, they utilized over 160 river …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… are huge, and incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern … a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized … Work Initiation Process (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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