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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of … performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … to that and what you guys do when you’re exploring your systems. Because I think the JGI has a little bit of a …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint … wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and … Episode Transcript … This is episode 5 of Natural Prodcast, our conversation with Brad Moore, a …
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Chordate evolution and the three-phylum system
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, otherwise, a …
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PR-PR: Cross-Platform Laboratory Automation System
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for higher education that develops … (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Well, it is and it isn’t. It depends on different systems of secondary metabolism and the things that are in … can make some guesses, but we’ll have to do some technology development to try to improve that. Like we talked about, …
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User Executive Committee Charter
… Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI … users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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