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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … build far-reaching communities of researchers to bring down barriers to productivity.   … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through … multiple locations. Back in the classroom, JGI researchers walked students through the processes of DNA sequencing, …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for … of high-quality fungal reference genomes, this program is an important initiative that expands and diversifies …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really … but-- [LAUGHS] I feel like a lot of people hedge their way into natural products by starting out in synthesis and then …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising … this summer through the Biotech Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of … episode with her in the near future where we can dive into that. And I’m also dying to talk in more detail about … are coming up with techniques. And my colleague Allison Walker at Vanderbilt is coming up with machine learning …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, … genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving … While an ever-increasing number of phage and virus genomes have … Multiomics approaches such as metagenomics and metatranscriptomics provide invaluable information on …
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