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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … workflow that combines three independent gene-prediction methods to produce more complete gene models. The JGI …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … The researcher then submits a proposal for consideration in the next … as needed), and the work plan is written into a Statement of Work document. …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … been able to not only purchase their own HPLC to enable faster analysis of their plant extracts, but also establish … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Revisiting a ‘simple’ fungal metabolic pathway reveals redundancy, complexity and diversity
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Dynamic substrate preferences predict metabolic properties of a simple microbial consortium
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Genome Sequence of the Fleming Strain of Micrococcus luteus, a Simple Free-Living Actinobacterium▿ †‡
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … more.  Microbes excel at recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Alignathon: a competitive assessment of whole-genome alignment methods
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Reply to: Examining microbe–metabolite correlations by linear methods
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MAGI: A Method for Metabolite Annotation and Gene Integration
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … the evolutionary history of strawberries wasn’t completely accurate. “They took every single gene from octoploid … But once we deciphered the subgenomes we came up with a simple series of events leading from multiple small wild …
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