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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any … Download plant, algal, fungal and microbial genomes and …
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A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey
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Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake
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Diversity and evolution of nitric oxide reduction in bacteria and archaea.
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Aerobic bacteria and archaea tend to have larger and more versatile genomes
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy listening! … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no … For further details, please reach out to the Group Lead …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic … haloarchaea from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also characterized … This work was supported by the Australian Research Council … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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