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Genomic features of bacterial adaptation to plants
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Establishing a versatile toolkit of flux enhanced strains and cell extracts for pathway prototyping
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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Genome-wide identification of bacterial plant colonization genes
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Elucidating Bacterial Gene Functions in the Plant Microbiome
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Bacterial barcoding facilitates plant microbiome studies.
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The … in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … colonization, which can affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Each portal lists a contact, or you can reach out via the form on our website.   …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … Episode Transcript …
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