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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … that truly integrated the capabilities of more than one facility. The FICUS initiative not only simplifies and …
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Partnerships Development Team
… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. Click to … enable research jointly sponsored by the Berkeley Lab and one or more partners for shared benefit. Industry partners …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … been succumbing to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water … Stokstad E. Genetics. Genomes highlight plant pathogens’ powerful arsenal . Science. 2006 Sep 1;313(5791):1217. doi: …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … Combining CRAGE with CRISPR provides researchers with a powerful addition to their toolkit to study gene function. … hit the scene in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, …
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Robert Bowers
… studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological … DNA sequencing, informatics, and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … in as-yet unveiled microbes. Harnessing the collective power of more than 26,000 microbiome datasets, all … sequences evaded classification. Researchers also tried to hone in on the function of the genes via 3D modeling, and …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … The planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers … have been generated using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have used … JRS is supported by the NASA Astrobiology Institute Rock Powered Life grant. RS is supported by NSF grants …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems …
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