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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial … the predator-prey dynamics in these mats helps constrain models that estimate biogeochemical fluxes. Summary Previous … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … at naturalprodcast.com Special thanks, as always, to my co-host, Alison Takemura. <woohoo> If you like Alison, and want …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … diversity with an aim to improve predictive ecosystems models, University of Michigan’s Melissa Duhaime and The …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&amp;M University students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … to learn more about their experience? Watch the short video below:  Video Transcript: Zyiah Mikes : Hi. My name is Zyiah …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … exercises are freely available through the links below. Naturalist Myco Ed Fungal Genomics Education Project … Beyond providing a scalable solution for production of high-quality fungal …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … will be monumental as the last episode with Alison as my co-host. We recorded this an awfully long time ago, and she’s … Episode Transcript … In this episode, Natural Prodcast talks to the legendary Prof William Fenical …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science … virus sequences vary widely. In a previous effort, an international consortium recommended specific … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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