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Partners
… with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE …
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Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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JGI Portals
… Download plant, algal, fungal and microbial genomes and metagenomes — … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Cultivating Symbiotic Antarctic Microbes
… The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes … global carbon cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon … the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, … into gene families involved in adaptations seen in later plant lineages. The team found that some of the adaptation …
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Tracking the Origins of Methane-Producing Microbes
… applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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JGI@25: Using Team Science to Build Communities Around Data
… along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were … material in hand,” said Jeremy Schmutz, lead of the JGI’s Plant Program, including genomes that are both large and …
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Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’‐enriched enhanced biological phosphorus removal sludge
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Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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