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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Natural Prodcast Episode 8: Eric Schmidt
Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. I’ve known … for a long time – we worked together on Aflatoxin biosynthesis while he was a postdoc in Craig Townsend’s lab at Johns … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I …
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Frequently Asked Questions: Project Management
Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: … submit your proposal online using the Work Initiation Process (WIP) interface.    For commonly asked questions about … proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in …
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Natural Prodcast Episode 22: Alison Narayan
Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … I’m so excited about my lab’s robot is that it gives us a tool to help us– DAN UDWARY: You can generate that data. …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to … First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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