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Biotech Partners Summer Intern Co-Authors NAR Paper
… rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech … to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … CRISPR systems. The collaboration has resulted in several papers, including one in 2018 on the discovery of miniature … in so many different species, there was a good chance that nature was using it to do something important.” Related …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature … come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … need to relate to (meta)genomics, and at least one of the papers they reference should be hot off the press. She tells …
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10 From JGI on the 2019 Highly Cited Researchers List
Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology section as “those that … production to agricultural plant pathogens. Reported in Nature Genetics, the work is part of a long-term project to …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC … & quality requirements for samples submitted to the DOE JGI. Plate-based Preparation Guidelines DNA Preparation …
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Behind the Paper: Hot Springs Metagenomics
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in … dimensions — how big (or small) can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. … as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) …
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Metagenome Program
… tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … Project began in 1990 when the U.S. Department of Energy (DOE) partnered with the National Institutes of Health. The … al. The DNA sequence and biology of human chromosome 19 . Nature. 428, 529–535 (2004). doi:10.1038/nature02399 …
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Microbiome Data Science Team
… thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… to the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their … or fields through the publication of multiple highly cited papers during the last decade” by Clarivate Analytics. This … Families (NMPF) Catalog . Published in the October issue of Nature, the study highlights the vast functional diversity …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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