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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Natural Prodcast
… is a “fireside chat”-style podcast about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and specialized metabolites … serves as an important line of communication to the scientific community. Host Dan Udwary talks to luminaries in …
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Natural Prodcast Episode 4: Nancy Keller
… we had with scientists in the field of natural products. So, it’s a departure from the previous episodes where … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something …
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Partners
… facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data infrastructure …
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JGI Workshop at SIMB NP Meeting
… often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of … genomics capabilities that address these issues. Check the scientific program for relevant posters. …
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Special Initiatives & Programs
… and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale … their strains for sequencing, as long as they have a scientific question that is relevant to DOE missions.  Learn … the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …
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Frequently Asked Questions: Proposal Submission
… from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … to metabolomics data, depending on the specific product types covered in the call.    If you have technical … If your project makes it successfully through the scientific review and is selected, we will provide you with …
Learn more
Game On: High School Students Drive Everglades Metagenomics Study
… sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the … class decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the … as a class, the students learned about how to write a scientific paper. They wrote, edited, and rewrote a …
Learn more
FICUS Overview
… had to apply to each facility with separate review schedules and selection processes, making it difficult to … and streamlines this process, but enables scientists to conduct fundamental science experiments in ways they couldn’t … technical feasibility and readiness to begin work.  During scientific peer review, proposals are evaluated and placed …
Learn more
JGI@25: From Life at the Extremes to Editing Genomes
… (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems … refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Natural Prodcast Episode 15: Katherine Duncan
Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you are Kate Duncan? Or … Kate Duncan: Oh, goodness. I mean, if you were to find my scientific papers, that would be Katherine. Dan Udwary: … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan …
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Plant-Microbial Interactions Group
… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … found in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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