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Ken Chu
… of analytical tools and user interface components for the IMG family of systems. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… it,” said Eugene Koonin, a senior investigator at the NCBI and one of the senior authors on the paper, of the … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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Natural Prodcast Episode 19: Bill Fenical
So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … that we needed to ask whether they would do the full genomes for us. So fortunately, the secondary metabolite … be some real surprises. I mean, they’re probably smaller genomes. They’re gram-negative bacteria. But we want to see …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ … on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative analysis, 824 new …
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Natural Prodcast Episode 1: The Primer, Part 1
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Special Initiatives & Programs
Please allow a minimum of  two weeks for your request to be processed. Investigators wishing to expand on their DOE-BER …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel …
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Introducing New Members of the JGI User Executive Committee
… [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they … to assist JGI in extending its activity-based cell sorting pipelines to further the link between cellular phenotypes … to offer my insights in promoting diversity, equity and inclusion (DEI) in STEM disciplines to address JGI research …
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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