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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … from simple to complex carbohydrates, and then convert them into simple sugars. More importantly, when faced with a … Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining …
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JGI Advisory Committee
… is convened by the JGI Director to provide guidance on the Institute’s strategic, scientific, technical, informatics, management, and operational objectives. Serving … committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's … Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw from the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … And with Christian, I started getting a little bit more into fungi and learning the differences of all the genetic … or whatever you’d like, whatever D– you can submit any DNA sequence really, and it will go through SMC’s pipeline. …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose … This work was supported by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy and …
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Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Natural Prodcast Episode 17: Cassandra Quave
… is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of … always wanted to write a book but it’s really hard to break into that area. I mean you have to secure an agent and … that is often done, where we’re really just looking at DNA sequences, and we don’t always know necessarily or pay …
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Soil virus offers insight into maintaining microorganisms
… the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis team synthesized and cloned both chitosanase … chitosanases originated in bacteria before being modified into virus-specific versions through genetic drift and … X-rays.  This study only begins to unearth the insights to be found within soil viruses and AMGs. It could …
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Functional insights of novel Bathyarchaeia reveal metabolic versatility in their role in peatlands of the Peruvian Amazon
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … distinct clusters, or ecotypes. These ecotypes fall into two main groups: two ecotypes dwell in the sunlit upper … EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Metabolic Modeling of Fungi
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