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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be … a single gene makes messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately … to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral genome fragments …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Expanding Virophage Diversity
… viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are … sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal … 10.  Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. … support with characterizing  fungal conserved genes families of unknown function looking across the entirety of …
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Viral Genomics Group
… interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays … improved annotation and functional prediction for phage proteins user-friendly integrated pipelines (MVP) and databases (IMG/VR) for viromics analyses …
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VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
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