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Gone with a trace: cataloguing the disappearing gut microbes
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… hear from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with … to understand how the molecules in tiny microbes can impact whole ecosystems. Part of the reason he’s asking this …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including … agreement, required by the DOE for all work performed in its User Facilities, is a legally binding contract.   All … will replace the active version. For researchers with a Howard Hughes Medical Institution (HHMI) appointment, a version …
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Data Policy
… by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information … sharing. We also recognize the need to have a limited and time-sensitive protection of certain types of data …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After … a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately … come from the public sector: academic and government institutions — with capabilities that had remained largely unknown and … Our User Programs entail a competitive, proposal-based process including peer review. The …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most … The researcher then submits a proposal for consideration in the next review cycle. … peer review, proposals are evaluated and placed in rank order by the reviewers. The ranked proposal list, along with …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique opportunity for researchers to request the capabilities and … of funds. All JGI data is made publicly available in accordance with the JGI’s Data Policy . In cases where the JGI … as well as staff at the other participating facilities, who consider technical feasibility and readiness to begin …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … communities harbor tens of thousands of different organisms who all consume different compounds. Microbial species will …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant … He did this with aplomb, managing his dedicated “Ops Team” who dealt with leaky roofs, backed-up toilets, and ground … also sang Ray’s praises. “There’s just so much he’s done for JGI and the Lab” Sharlene, referring to the …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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