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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance … Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve … but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the …
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FICUS-NERSC/KBASE
… performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological … and analyses available to the community at large. In most cases where the JGI provides more customized analysis, the …
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Cataloging the Microbes that Manage the Health of River Systems
… to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy … predictive watershed scale models to manage river ecosystems. One application for the information is the development of river health diagnostic systems to monitor for and identify land use or water …
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New Research Sheds Light on Diversity in the Deep Sea
… survive in very hot, high-pressure and chemically-rich ecosystems. This means they hold clues for understanding how … microbial communities could lead to the development of new biotechnologies around clean energy,  biofuels and … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. …
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Workforce Development & Education Outreach
… JGI’s role in enabling complex biological and environmental systems research.  …
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A thermostable Cas9 with increased lifetime in human plasma
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers … and the Lawrence Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area funded by the US Department of …
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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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Emiley Eloe-Fadrosh
… to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data … quantitative analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. …
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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in the plant and … majority of the ground cover in peatlands. These boggy ecosystems are acidic and have very little oxygen, which is … and their role in sphagnum’s survival opens up a new avenue to explore for protecting these ecosystems. …
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JGI Announces 2026 New Investigator Portfolio
… who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science … these researchers will harness capabilities including metagenomics, metatranscriptomics and genome assembly to … microbial and plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal …
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