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Natural Prodcast Episode 15: Katherine Duncan
… about Antarctica, and we want to talk about molecular networking, because I really enjoyed the review that you wrote … was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted … may be submitted at any time. Support is limited to work included in the BER-funded proposal, and PIs must … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… dioxide, methane, and nitrous oxide). Summary To do this work, the international scientific team led by Petr Baldrian … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Natural Prodcast Episode 6: Marc Chevrette
You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … of Wisconsin, where, among lots of other things, he works on the Tiny Earth project, which you’ll hear him … describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … proposal details with the PI and proposing team. The work plan is formalized in a Statement of Work document. At …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … quarter. In general, projects that do not require any rework will have the fastest cycle times, so please ensure …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … consider technical feasibility and readiness to begin work, checking such factors as genome size, polymorphism …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale … interested in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific … them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and gain …
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