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Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings … products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public …

… up. And that is actually how I describe what I do to nonscientists. I think it’s quite accessible. I used to do the … worked. And as a result, there’s been a lot of work on open pond systems and infrastructure and growing microalgae. … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …

For many scientists, the culmination of their work into a written … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … to pursue a career in science, said that her eight weeks spent working with Salamov and Grigoriev at the JGI strongly …

DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … a freely available and developer extensible platform where scientists can analyze their own data alongside public data, using a variety of open-source bioinformatics apps and compute resources to …

The JGI Project Management Office carries out a number of … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After … with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs are also shipped at …

The JGI has diverse capabilities in: DNA and RNA sequencing, … of choice Glycerol stock of sequence verified clone depends on project DNA Synthesis Combinatorial libraries … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number … Maximizing soybean yield is critical to energy independence in the U.S. Not only does it pair with maize, the … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has …

… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

When submitting sequences to the JGI DNA Synthesis program, please include the following … an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or …

… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number … help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … cancer, and Crohn’s disease, among other conditions. While scientists around the world were busy sequencing the human …