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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … since I started the podcast, I get lots of questions from scientists about whether and how they can work with the JGI, … what a CSP is, how you apply for and get one, and what happens once you do. Before we start, I realized in listening …
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Natural Prodcast Episode 3: The Primer, Part 3
… “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is … 1 is here and part 2 is here ) so you understand what’s happened so far in the conversation between me and Alison. In … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has …
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Natural Prodcast Episode 17: Cassandra Quave
… mom of a mini pig and a dog. So we have a lot of action happening now at home. ALISON TAKEMURA: Wow, amazing. I don’t … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … I think this is something I’d love more natural products scientists to think about, because if you look at the 36 …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of … information, including a Login Walkthrough and FAQ . –– The JGI Project Management Office carries out a number of … with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs are also shipped at …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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Frequently Asked Questions: Project Management
… Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. …
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Improving the Cacao Genome and Phytozome
… will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … T. cacao has now been completed and released by HudsonAlpha scientists, with the help of funding from Mars Wrigley. The … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new … Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein Data Bank … exploration, granting access to diverse datasets that deepen our understanding of how organisms interact with each …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … to pursue a career in science, said that her eight weeks spent working with Salamov and Grigoriev at the JGI strongly …
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