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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … to pursue a career in science, said that her eight weeks spent working with Salamov and Grigoriev at the JGI strongly …
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User Support
The JGI Project Management Office carries out a number of … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After … with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs are also shipped at …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … of choice Glycerol stock of sequence verified clone depends on project DNA Synthesis Combinatorial libraries … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … Maximizing soybean yield is critical to energy independence in the U.S. Not only does it pair with maize, the … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following … an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … cancer, and Crohn’s disease, among other conditions. While scientists around the world were busy sequencing the human …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the …
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Natural Prodcast Episode 8: Eric Schmidt
… “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … this for a long time. But in reality, by chance, I happen to stumble as an undergraduate on the amazing John …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! This is the first … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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University of California, Merced Internship Program
Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them …
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