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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … or C-fern — came out in the September issue of Nature Plants . C-fern has a genome approximately three times the … been manipulated over time by humans, they tend to have unusual genomes. “The OGG plants provide a true view of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has progressed, …
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Microbiome Data Science Team
… diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. …  45(D1):D457-D465. Paez-Espino, D. et al. (2016) Uncovering Earth’s virome.  Nature   536:425-30 Kyrpides NC. et al. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a … in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and … Terpenes are made via a tangled network of enzymes in plants. To better pinpoint the biosynthetic routes that …
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Metabolomics Technology Group
… datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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Natural Prodcast Episode 9: Roger Linington
… let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … with institutions in Panama. And so I had this very unusual postdoc where I went to Panama, straight out of my … She talks to lots of great scientists outside of secondary metabolism, and if you like what we’re doing here, you’ll …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that … at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to unveil the … study also references data from the JGI’s  Genomes from Earth’s Microbiome , or GEM catalog). Then they removed any …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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