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Frequently Asked Questions: Proposal Submission
… about our proposal submission process. You can review successful letters of intent and submissions at the bottom of … go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … missions .   The USDA, NSF, and NIH all operate sequencing programs, and potential users are urged to contact these …
Learn more
Frequently Asked Questions: Project Management
… projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, … a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and … Group supports our Microbial as well as Metagenome Science Programs …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … it’s a play on words – a podcast about natural products. And natural products is an older term for the special, …
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Natural Prodcast Episode 6: Marc Chevrette
… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … at, historically, for these pathways, they’ve got really high GC content, which means their base usage is skewed, and … what my research focus has been. Maybe the last four or five years or so, this involves, you know, how biosynthetic …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has … computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … sparked your interest, and you want to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces … expecting to. So you might know of like three or four or five molecules that you maybe had found and ground from your …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control …
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FICUS-NERSC/KBASE
… scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of … two undergraduate students and two graduate students from UC Merced. Cristhian Gutierrez and Bryan Rangel Alvarez are …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … quorum sensing and its effects on regulation of natural product biosynthetic pathways, which led her to a successfully … trans in order to cyclize at that small of a ring, which is highly unfavorable. DAN: Oh, I did not know that. That's …
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