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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are …
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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … as needed), and the work plan is written into a Statement of Work document. …
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Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … to grow. If you hear Nigel talk, he is very interested in sequencing a lot more natural product-heavy culture …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … Program is focused on understanding the critical roles of metabolites in living systems, particularly as they …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two … This is episode 5 of Natural Prodcast, our conversation with Brad Moore, a …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and metabolomics capabilities …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley …
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