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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … I could see a certain time span within these biosynthetic gene clusters. There’s gene fusion going on, and then I …
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Crops as Tough as World Cup Turf
… In our warming world, we’ll need corn, sorghum and other crops to grow … conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists … Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … and a JGI Flagship Plant. All three  Brachypodium  grasses have small genomes, short life cycles and can be …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Making a Lichen Together
… The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … of the results were unexpected. For example, lichenologists generally anticipated that in this symbiosis going back …
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