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Interactions between plants and soil shaping the root microbiome under abiotic stress
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid
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Biodesign
… support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … and assembling physical DNA constructs that can then be functionally characterized.    We provide custom DNA …
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A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There … (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the DNA that was breaking the sequencing from really being functional was these secondary metabolite pathways. So why … similar to like human crops like corn. There’s low genetic diversity in the crop. So they’re susceptible to disease. …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … it’s really about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based … A few examples of those are obviously expanding the diversity of known secondary metabolites and their …
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Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome
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