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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore … ported to the GPU architecture. A GPU hackathon is a five-day coding event that offers participating teams the …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … JGI researcher Dan Udwary hosts this “fireside chat”-style … the science and scientists of secondary metabolism. As the JGI acts on its goals in — and builds out its capabilities … field about current and future developments, and how the JGI can be part of that space. …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building … to clean out the building.  We don’t want to just throw everything into the landfill, we need to be able to divert …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of … information, including a Login Walkthrough and FAQ . –– The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… in cooperation to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor …
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to climate change. “With this dataset I can see where every microbe is found, and how abundant it is. That’s very …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities … opportunities and ultimately, an understanding of the JGI’s role in enabling complex biological and environmental … The JGI and UC Merced have had a long-standing internship … Modeled on the JGI-UC Merced internship program, a similar collaboration …
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Styling for Safety: PPE, It’s the JGI Way
… to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … and remind our colleagues to do the same. Check out our JGI trendsetters below to see examples of appropriate PPE, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Environmental Genomics Group
… S., Roux, S., Seshadri, R. et al. A genomic catalog of Earth’s microbiomes. Nat Biotechnol 39 , 499–509 (2021). … revealed as pervasive in bacteria and archaea across Earth’s biomes. Nat Microbiol 4 , 1895–1906 (2019). …
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Viral Genomics Group
… measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question … towards specific phages and/or hosts. To that end, the JGI Viral Genomics group is exploring different approaches … The JGI Viral Genomics group is leading and/or contributing to …
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Microbiome Data Science Team
… diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. …  45(D1):D457-D465. Paez-Espino, D. et al. (2016) Uncovering Earth’s virome.  Nature   536:425-30 Kyrpides NC. et al. …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new … Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein Data Bank … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure …
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