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Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling
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Webinar: SIP technologies at EMSL and JGI
… our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to … can harvest the sample, then we can put it into the laser system 7. Q: Can radioactive isotopes be used at EMSL? A: … Moran’s talk, how long do plants need to be placed in a 13 CO2 chamber for sufficient labeling? A:  If you’re looking …
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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Effects of Polar Light Cycle on Microbial Food Web
… nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in … greatly contributes to our larger understanding of carbon and other nutrient cycles on a global scale. Summary … found that the green sulfur bacteria population spiked to 83%, only to dramatically fall to 1% in early spring and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed …
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Sequencing Technologies & Products
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Mining Metagenomes for Cas Proteins
… on genome editing has focused on the seminal CRISPR-Cas9 system, which targets double-stranded DNA. The discovery of … molecules broadens the range of applications for CRISPR-Cas systems. It also underscores the untapped potential waiting … and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune mechanism in bacteria that confers …
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Functional plasticity of HCO3 – uptake and CO2 fixation in Cupriavidus necator H16
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Triggering Morel Fruiting
… because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated …
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Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
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Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). … typically use a measure of biomass, e.g. wet weight, total carbon analysis of the biomass, etc. Q:  If we have only the … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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