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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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University of California, Merced Internship Program
Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them … in their own abilities. …   Want to see past projects? Read more below       …   Internship Snapshots   …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and …
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Natural Prodcast Episode 4: Nancy Keller
Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: … in that area?   NANCY: Oh, well, I love fungi, okay, this doesn’t even have anything to use natural products … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … genomes to support both basic research and applied science. By advancing fungal and algal genomics, the program … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working …
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Natural Prodcast Episode 15: Katherine Duncan
… into secondary metabolites? Kate Duncan: So I always liked science in school. I wouldn’t say I was one of these people … has been really, really fun. Alison Takemura: And then does that also– well, I guess the question really is, do … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … transcripts, and show notes with links to papers around the science we talked about, at natural prodcast dot com. So, … bit of entomology as well. DAN: Right. Yeah. No, yeah, Bill does it all. A lot of people I think-- well, maybe I'm …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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