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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government … data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech … data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and … .   … In support of user science, the JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Partnerships: Myco-Ed
… the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …
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Natural Prodcast Episode 5: Brad Moore
… special way to be able to hang out with a parent who then doesn’t become your parent anymore, but has this other role … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … a little bit more difficult. And so getting out clean DNA can also be a challenge there too. So JGI we really have …
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Environmental Genomics Group
… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Natural Prodcast Episode 8: Eric Schmidt
… metabolite peptides. And there are two ways that nature does this. The more well-known secondary metabolism systems … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … and so on that we can consult in designing pieces of DNA that we can use to test these issues. The second area …
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User Programs
… proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive …
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Partners
The JGI leverages its existing partnerships and develops others … the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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Natural Prodcast Episode 4: Nancy Keller
… in that area?   NANCY: Oh, well, I love fungi, okay, this doesn’t even have anything to use natural products … to begin with. So transformation, or manipulation of the DNA of genes and bacteria, occurred much faster earlier than … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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