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… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  … “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of …

… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for … has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …

… the genes for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you … restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to …

CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil …