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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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DAS Tool for Genome Reconstruction from Metagenomes
… The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in … from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness …
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global … this mission by enabling large-scale genomic discoveries, data integration, and AI-driven analyses that convert …
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Marine Microbe Contains Multitudes
… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under contract number …
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has … to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … The developed strains represent an additional phase of user-accessible project types, in which DNA-based molecules …
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CSP Large Scale Call
… for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… to request the capabilities and expertise of both national user facilities in one research proposal.  Submit research … use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in their own labs or … users with various outputs free of charge, including data such as fully annotated genome assemblies or …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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