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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … JGI intern now a postdoc in Merchant’s lab who is first author on an upcoming paper, discovered that in the original … names. Sean Gallaher, also with Merchant’s lab and second author on the paper, studied viral genetics and gene therapy …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… for thousands of branches,” said Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled … isolate genomes is clear cut,” said Rekha Seshadri, lead author of the study. “And even if one is agnostic to …
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Viruses Reprogram Cells into Different Virocells
… uninfected cells. Duhaime and Sullivan are co-corresponding authors, while the study’s lead author is Cristina Howard-Varona, a postdoctoral researcher … (FICUS) initiative through an award to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… at the University of East Anglia (UEA, UK) and senior author of the study. “Prokaryotes are not capable of … and other physico-chemical properties,” said study coauthor Igor Grigoriev , JGI Fungal & Algal Program Head. … waters that have an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the …
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Glacier ice archives nearly 15,000-year-old microbes and phages
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Extreme dimensions — how big (or small) can tailed phages be?
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Thousands of small, novel genes predicted in global phage genomes
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Axel Visel
… Xu J, Northen T, Visel A , Bristow J, Niyogi KK, Wei CL (2015).  Lineage-specific chromatin signatures reveal a … of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati … I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the developing …
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Expanding Virophage Diversity
… the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a … diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  discussed an early version of the …
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Pinning Down a Piece of Photosynthesis
… high-iron homeostasis,” said Nicolas Grosjean, the first author of this paper. Grosjean is a research scientist at … at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two histidine residues can be … list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …
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Supporting Global Research into Actinomycetes
… Streptomyces is more than just a funny word. The 500 species described within the group are responsible for … tools, skills and protocols,” explained Hiroshi Otani, an author on the paper and contributor to the platform. Otani …
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Global overview and major challenges of host prediction methods for uncultivated phages
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