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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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Natural Prodcast Episode 9: Roger Linington
… accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the … the chemical landscape of any sample set. So if you have 100 organisms, and you ferment them under one set of … ROGER:  I’d be surprised if it was still a problem in 10 years. I think that the field – I would say that the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … a bit embarrassed that we recorded this conversation about 10 months ago. I was pretty green at the time and had some … to my daughters– what did they think would be important in 100 years. Would natural products be important for …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Events
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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JGI Portals
… Portal was replaced with the Data Portal and sunset in 2026. The Genome Portal was designed to provide unified … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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Extracting the Secrets of Secondary Metabolites
… cluster. That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect … of Science User Facility, is supported under contract DE-AC02- 05CH11231. …
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Microbiome Data Science Team
… of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … by miniature CRISPR-Cas14 enzymes. Science 362(6416):839-842. Duerkop BA, et al. (2018) Murine colitis …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     … % Goal   FY 2025 Total   700.0 1,144.186 163% 8,585 8,640 100.6% Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … In service of solutions that will impact society, the 2024 strategic plan introduces the JGI’s new vision to lead … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Products
… Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … metabolites and unidentified features in spectra. 167/214 Metabolomics Non-polar metabolite analysis Relative …
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