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The JGI Data Portal: Improving User Experience
… data, the team noticed that a large percentage of Phytozome users who were seeking to download all the data associated … this task. Improving the download process for this group of users offered the promise of an immediate benefit. The Data … to more broadly represent JGI’s data. It includes several user-validated features and updated functionality, such as: …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full … archaea, expressed his interest in giving a voice to JGI users who feel that certain data sharing policies fail to …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … Michigan State University. She aims to help overcome common user bottlenecks in access, analysis and sharing of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to …
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A Guide to Conquer the Biological Network Era Using Graph Theory
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Fungal & Algal Program
… across the fungal tree of life or its major branches for users to characterize and propagate annotations across … tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to … generated by the JGI and by others. The web portal allows users to navigate these genomes and conduct comparative and …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … across critical sectors: Energy and bioproducts: JGI user research advances understanding of biological processes … materials production. Through collaboration with its users, the JGI provides genomic insights to improve energy …
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Natural Prodcast Episode 11: Marnix Medema
… there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they … attitude as a developer of software, because if a lot of users are misinterpreting the results, then you need to do … to analyze. But Alison actually, my group is a big user of our tools as well because we do not just develop …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … Q:  Apart from instrumental support, how much help can users expect for data analysis of the different omics …
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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … (JGI) is a high-throughput AI-centric genomic science user facility located at Lawrence Berkeley National … In 2004, the JGI established itself as a national user facility, and has grown to serve a worldwide community …
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Metagenome Program
… tools and visualization resources that support user analysis of biogeochemically-relevant pathways, … linked to custom interfaces and visualization tools for user analysis. Additionally, the Program works to link … Prospective users with questions on how to partner with the Metagenome …
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Secondary Metabolites Program
… their synthesis. The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics … bioactive secondary metabolite compounds. To support users, our efforts include developing computational tools … Expression Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). …
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