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… and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader …

… guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … genetic backgrounds, and that these 8X populations contain novel combinations of genetic diversity. We also found that …

… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

… for sequencing and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future … MycoEd receives organizational and developmental support from KBase (The Department of Energy Systems Biology …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …

… Mass Spectrometry, NanoSIMS, and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required … samples are in hand at JGI? A: It takes a few months to go from start to finish, i.e., QC to separation to library … separating the 13 CO2 that we’re using to label the leaves from the soil. So we have a separate air chamber around the …

… external illumination, making them difficult to use inside deep tissues. Additionally, all plants, many bacterial … changes in cyclic di-GMP via live cell imaging. Summary From digestive tracts to plant surfaces and soil, bacteria … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a …