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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … P. vulgaris on Phytozome … Plant Datasets …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … have also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … called methanogenesis. Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and … address some of the most pressing challenges of our time. For more information, please visit  …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the … to advance foundational science, creating opportunities for the global research community. The U.S. Department of … Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, Arizona State University … Y, Otani H, de Raad M, Kuftin AN, et al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at … X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint … plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to … Emiley Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. …
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