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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … test what genes affect the plant’s adaptability to various environmental conditions. “To accelerate breeding for  …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a … book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, resulting in a …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI … that pays dividends. Microbes are at the core of many environmental processes, and their genetic makeup forms the …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to enable great science that will help solve energy and environmental challenges. Chlamydomonas is a single-celled … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… artificial intelligence to aspects of research questions Another intern summer has closed at the U.S. Department of … and technical writing while also making new connections with both researchers and other interns. At the end of the … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a … Boasting adaptations in order to protect themselves from environmental stresses, ferns’ secondary metabolites and … was supported by US National Science Foundation (NSF; grant PRFB IOS-1907220 to D.B.M.; grant MCB-1856143 to R.J.S.; …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … As a leader in genomics for bioenergy and environmental solutions, the JGI is well-positioned to …
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An Addiction Crucial to a Fungus’ Reproduction
… of its reproductive machinery The Science To better understand how beneficial organisms (symbionts) are transmitted … researchers investigated the role that bacteria living within a host (endosymbionts) have on fungal host … reproduction, and the reproductive genes they regulate. The bacterial endosymbiont, Burkholderia , is recognized as a …
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Integrating Experimentation with Data
…  Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their … Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in …
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