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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses … bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … Google Scholar. … Education … Awards and Honors … Selected Publications …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … metagenome binning software … Education … Selected Publications … Software …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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