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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … is manually separated into a few different groups based on its density — DNA containing isotopes is “heavier” than DNA …
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Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes.
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … and often results in highly fragmented data, which limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … is the leading tool for accurately editing genomes, its effectiveness has historically been limited due to the … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 … lineages, leading to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those … Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. One …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … also considers this to be a candidate bioenergy crop for its potential production of biomass on marginal lands not … to produce good yields under water limiting conditions. Epigenetic Control of Drought Response in Sorghum (EPICON) is a …
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