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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots … researchers and robots have made these experiments easier for scientists everywhere. …
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The Fungi That Survive In Antarctica
They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their … one day help other organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and … are working with scientists from around the world – and the JGI – to understand them better. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal peril. But corals comprise … and a little-characterized microbiome. When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help them take the heat. …
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From Textbook to Real World Applications
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
Mitchell (Neochromosome) have worked to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, with some artistic endeavors along … the way. Eventually, the goal is to create an entirely human-generated yeast genome. …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to …
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