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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith … Along with the existing UEC members, their areas of study span the research interests of the JGI’s user …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more extreme weather events … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … noted that even prior to the sequence being published in  Nature , immediate progress had already been made …
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Ben Bowen
… spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … Dr. Bowen’s expertise in spectral alignment, molecular networking, chemoinformatics, and bioinformatics facilitates … niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, T., Wang, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and …
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