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The Soil Blooms Green
Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn … Mary Ann Bruns and Terry Bell are digging in to understand how. …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab … projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of …
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Accelerating Metagenomics Discoveries with Deep Learning
Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … in order to create more useful tools for the bioinformatics community. Other work presented at the workshop included how …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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The endosymbiotic box of protective tricks
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … But scientists have wondered exactly how the microbial community carries out its helpful metabolism: who’s … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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2023 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … capabilities, large-scale data, and professional expertise to support the global research community in studies of complex biological and environmental …
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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