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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest
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Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands
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The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem … of the Microbial Genomics Program, is enthusiastic about new collaborative projects: “We are excited to continue our … but are also looking forward to jointly expanding into new areas of research. The extensive algae collection at …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic Pacific Ocean. The Impact The microbial communities in the ocean drive the biological pump …
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Accelerating Metagenomics Discoveries with Deep Learning
… Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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JGI@25: Solving the Mystery of the Missing Oil
… cell genomics expertise led to the identification of a new “oil-seeking” species related to Oceanospirillales , … also helped track and characterize the shifting waves of microbial communities involved in removing different … with the JGI successfully simulated how successive waves of microbial populations degraded the dispersed oil.   Terry …
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JGI@25: The Little Alga That Could
… on green algae. “The Chlamy genome launched over a dozen of new Chlamydomonas genome-related Community Science Program … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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