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Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments
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John Vogel
… on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: … Selected Publications …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US …
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Crysten Blaby-Haas
… of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in … expanding her experimental repertoire to include in vitro protein-based techniques, algae, and plants, while focusing on understanding the evolution and function of proteins involved in metal homeostasis. She began her …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint … carbon and nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… We work with start-ups and mature companies, as long as the data are not proprietary.  Q3: What are the acceptable …
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Probing the active fraction of soil microbiomes using BONCAT-FACS
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Sorting for secreted molecule production using a biosensor-in-microdroplet approach
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De novo DNA synthesis using polymerase-nucleotide conjugates
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