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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses …
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Chapter One Structural, Mechanistic and Genomic Insights into OCP-Mediated Photoprotection
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break … assist researchers in moving toward functional genomics studies to learn more about the inner workings of plant-host …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
Call. These projects include cutting-edge research into microbial communities — from freshwater estuaries reshaped … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in …
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California …
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