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A Complex Confection Decoded: Sugarcane Reference Genome
… could improve future sugarcane varieties so that they can adapt to future environmental conditions. Additionally, … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in … effects of breeding practices that transformed sugarcane into production factories for sugar and biomass. …
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Orthophosphate uptake onto woodchips in denitrifying bioreactors is enhanced by anoxic-(anaerobic-)oxic cycling
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … , these environmental metagenomes began to offer a window into viral existence. Along with highlighting the viruses in … of this field, the JGI has leveraged metagenomics to boost understanding of environmental viruses. In 2016, Nikos …
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Learning to Look
… As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … phages!” said Krupovic. “We can now start inquiring into their impact on microbial communities in the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … characterizing the planet’s microbial diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into potential applications they may have in a wide range of …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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First Monoploid Reference Sequence of Sugarcane
… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … cultivated crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the … benefits expected from a genome sequence are better understanding the roles of genes in traits such as sucrose …
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Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice Bacteriophages
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Finding the Fermenters
… The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … project . They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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