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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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Year in Review: JGI’s 2018 Progress Report Available Now
… is an image of Mono Lake, a saline soda lake east of California’s Yosemite National Park, taken by JGI’s own Jon … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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2022 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly … natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …
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JGI@25: The Little Alga That Could
… to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may be … JGI’s early sequencing of C. reinhardtii became available, data mined by the JGI shows that those sequences have been …
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JGI on the 2021 Highly Cited Researchers List
JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen … multi-institutional research team that combined field data with a reference switchgrass genome to associate … colleagues used an extensive JGI database to investigate viruses detected in the samples. Simon Roux co-organized the …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … at the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … ecology. We also know little about where to collect the California Cone Snail  Californiconus californicus (and cone …
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … she is committed to representing and advocating for early career users on the UEC. As a user of the JGI and …
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