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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… secondary metabolites, called terpenes. Terpenes are made via a tangled network of enzymes in plants. To better … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Webinar: MycoCosm Tutorial
… A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … While are still working on finalizing the tree and related publication the tree is still in development and not … search for genes/proteins by their commonly used names in publications? e.g. erg-1 (instead of the Gene ID etc., which …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic Pacific Ocean. The Impact The microbial communities in the ocean drive the biological pump …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions … JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January …
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Open Frameworks Training the Next Generation of Scientists
… interoperable, and reusable) data, readily available via the KBase platform. This effort grew from a  modularized …
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JGI@25: Strengthening Soybean
… and disease resistance  due to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … these vents, and underwater volcanoes,  researchers studied microbial communities across five oceanic regions. In doing … The bacteria, archaea and other microorganisms of the microbial communities around these vents survive in very …
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Tomas Tyml
… and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are notoriously difficult … an arduous wet lab process. Typically, after incubating microbial communities with labeled food or water, the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … that indicate repelled attempts to infect and lyse the microbial cells. This demonstration of the virus-host arms … National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … reusable, and more insightful, for the future of studying microbial communities.   …
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