Results

Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … reviewed and assigned NCBI taxonomy name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size … Attendees will learn how to identify their contributions using the Contributor Roles Taxonomy and what sorts of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference genome built off …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of … JGI and the Molecular Foundry.  Submission Deadline Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in …
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