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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … tools beyond biomass breakdown, extending into biochemical production.    Over time, as these projects have delivered …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … 12 plants, which are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to … genes. It provides detailed functional annotations, protein homologs, plant family information, and a genome …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause diseases, and … publications ,” emphasized Markus Göker, who managed the production of genomic DNA at DSMZ for GEBA-Actino and …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … methane-emissions as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers … chemical compounds that could inhibit microbial methane production. Another effort is in using microbial …
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and … genomics is targeted towards the development of improved biofuel feedstocks and understanding and ultimately …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … This is because MGEs can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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